rs31530233 SNP Detail

Summary

• ID
  rs31530233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171577034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTC TATCAGAATA TGAAGGTCCA
  Y
  GCTGGCTTCC AGGATCCCCC AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45105021	mCV24403605	ABI	CRAMUS_MOUSE	f	SNP		C	C		T		C
ss49748733	NES13032877	PERLEGEN	MM_PANEL2	f	SNP	C		C	T		T			T	C	C
ss120005030	PARCsnp_1.04783	PARC_SEQ	INBRED	f	SNP					T		C
ss146173641	ENSMUSSNP3681206	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss320120651	CHEV_1_173679597	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31530233					SNP	C	C	C	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748733	NES13032877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171577034 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	546 bp distal