rs31530302 SNP Detail

Summary

• ID
  rs31530302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116204817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCTTAT CTATGCTTAA
  ATTGTGCTAT AGCCTTGGGG GGGTCCCTCA TAGGTCAATC TTTTCTGCTT TGGGAATCAA
  TTACTGAGGT TATCTTCTTT AATAGGGAGC TGAACTTCTT CTGTATTCTT TTCTTAAAGT
  TTTTGCTTCT GCCTTTCACA TTACAGGCAG AAATTTAGTC ACACTTCCTC CTAGCAACTC
  Y
  GGGTAGTTAC ATGAGCGGAA CATTGCGTGC TTGTTGCTTA ATTCCCAGCT TCTCTTTTTT
  CTGCCAGAGG GCTCGTATTG TTTTTGCTTT GGTGCATCCT CTCCCCTCCT CCGAGGTCCA
  CACTGATGTC CTTCCTGTGC TTTTACTCTC TGACGGAGCT ATGCCTGGGG AGTCAGGAAA
  GCTGTGGTCT TTCTGTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061752	NES11712221	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31530302					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061752	NES11712221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116204817 () rs orientation: forward

Symbol	Name	Function Class
Tssr58357	transcription start site region 58357	1592 bp downstream
Tssr58358	transcription start site region 58358	876 bp downstream
Washc2	WASH complex subunit 2	within coordinates