rs31530346 SNP Detail

Summary

• ID
  rs31530346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191824237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG TTGAGAAGGG TGATTGTAGT
  R
  GACCTTAAAA TGGTCTCTTC CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45043340	mCV23925723	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146513897	ENSMUSSNP4408875	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320197042	CHEV_1_193963822	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31530346					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191824237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	1028 bp distal
Gm10516	predicted gene 10516	within coordinates
Rcor3	REST corepressor 3	1878 bp upstream
Rr29207	regulatory region 29207	436 bp distal
Tssr15825	transcription start site region 15825	1973 bp upstream
Tssr15826	transcription start site region 15826	1893 bp upstream