rs31531095 SNP Detail

Summary

• ID
  rs31531095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171486411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTTGCA TCTGTTGTCC
  GGCAGGATTT GTACGTAGAT TCTATAACTG TTGTGGCTCT CATGTTCTGA GATAGTTCCT
  CTCACTGAAA CTCTGCATAG ATTTGCCTAC ATCAGCCATA GAGTCATATC CTATTGATGT
  AACTTCAATC TTCTTGGATG GAACTGTGGA TCCCCTGAAA GAAGATGTGT GAAGCCCAGT
  Y
  TCCAGCAGCT TTGCTTACCT ATGTTTGACT GAAGCTGGAT GCAGGCTGGC AGAAAAATAG
  CAAGCAGCAC CCTCTTGTGT TCCGGTTCAG TGCAGTCCTC TGGTATCAGA TCTTTGCCTC
  CTGGCAGCAG CCAGTGTTAG AGCTTTCAGT CTAGGGTCCA GAACCCTGGA CACTGAGGAC
  TGATGGCCTC TGCACTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49748932	NES13034187	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31531095					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748932	NES13034187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171486411 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	1450 bp downstream
Rr423376	regulatory region 423376	within coordinates
Rr423377	regulatory region 423377	64 bp proximal