rs31531098 SNP Detail

Summary

• ID
  rs31531098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171486036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA AAAGAAAATG TCCAAATAGA
  Y
  GCTGAAGTGG AGTAAGTGTT AAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49748935	NES13034184	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	C	C		T	C	C	C		C
ss120001840	PARCsnp_1.14997	PARC_SEQ	INBRED	f	SNP								T		C
ss120004136	PARCsnp_1.04336	PARC_SEQ	INBRED	f	SNP								T		C
ss146171790	ENSMUSSNP3715668	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320120212	CHEV_1_173588599	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31531098					SNP	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748935	NES13034184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171486036 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	1825 bp downstream
Rr423376	regulatory region 423376	41 bp proximal
Rr423377	regulatory region 423377	439 bp proximal