rs31531100 SNP Detail

Summary

• ID
  rs31531100
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171485955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT GGGTAGGTGT GTCTGGTGAG
  S
  GAGCGTGCTC AGAGAAGGGG AAAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45093417	mCV24408147	ABI	CRAMUS_MOUSE	f	SNP		G				C		G
ss49748937	NES13034182	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C		C	G	G	G		C	G		G
ss120001835	PARCsnp_1.14995	PARC_SEQ	INBRED	f	SNP						C		G
ss120004131	PARCsnp_1.04334	PARC_SEQ	INBRED	f	SNP						C		G
ss146171781	ENSMUSSNP6230820	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320120210	CHEV_1_173588518	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31531100					SNP	G	G	G	G	C	C	C	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748937	NES13034182	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171485955 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	1906 bp downstream
Rr423376	regulatory region 423376	122 bp proximal
Rr423377	regulatory region 423377	520 bp proximal