rs31531101 SNP Detail

Summary

• ID
  rs31531101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171485870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTCTGT GCCTCTAATG
  TAGTAAATGT TCACAATCAG TAAATGTTCT ATGTCCCTAG GGTGCCACAC ACGCTTTAGA
  AGTGTGACAT CTAACCCCAT ACATGTCCTT TTGTTTGTGA GATGATGTGG TCATGCCTGT
  GACATACCAG CTTGTCTTTA GTAAGGAGCC GCTAGTATGT TAAGGCTAGA ACAATACCCG
  Y
  ATATGTTTAC CTCCTGGGAA TACAGAAACA AAACCAAAGT TGTAAACTGT ATTATTCAAA
  TACTGGGTAG GTGTGTCTGG TGAGCGAGCG TGCTCAGAGA AGGGGAAAAC GAGGAGTAAC
  ATCTGAGTGG GAAGAAGCTG GCAAAAAAGA AAATGTCCAA ATAGATGCTG AAGTGGAGTA
  AGTGTTAAGT AGATTTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49748938	NES13034181	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31531101					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748938	NES13034181	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171485870 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	1991 bp downstream
Rr423376	regulatory region 423376	207 bp proximal
Rr423377	regulatory region 423377	605 bp proximal