rs31531201 SNP Detail

Summary

• ID
  rs31531201
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171575479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG CAACATTGGG CATCCCCTGC
  M
  AATCAGAAGA ATCTCCTGAA TTCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J
ss49748744	NES13032961	PERLEGEN	MM_PANEL2	f	SNP		C		A		A		C		A
ss120005005	PARCsnp_1.04771	PARC_SEQ	INBRED	f	SNP			C		A
ss146173597	ENSMUSSNP7063080	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A				C
ss320120639	CHEV_1_173678042	CHEVERUD	SCREENING_POP	f	SNP							A				A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J
rs31531201					SNP	A	C	C	A	A	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748744	NES13032961	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171575479 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	385 bp proximal