rs3153196 SNP Detail

Summary

• ID
  rs3153196
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104122966 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGAAG GAGGAAAAGG GGAGGGGGCG
  K
  GCCACCGCCT TAAATCAGGG CCAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38848471	mCV24642322	ABI	CRAMUS_MOUSE	r	SNP	A	C	C	A
ss132752561	ENSMUSSNP4163765	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3153196					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104122966 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi3985	CpG island 3985	within coordinates
Cpgi3986	CpG island 3986	1656 bp proximal
Gm53648	predicted gene, 53648	1315 bp downstream
Gm72530	predicted gene, 72530	326 bp upstream
Mapt	microtubule-associated protein tau	within coordinates
Tssr3695	transcription start site region 3695	601 bp downstream
Tssr105373	transcription start site region 105373	687 bp downstream
Tssr105374	transcription start site region 105374	633 bp downstream
Tssr105375	transcription start site region 105375	612 bp downstream
Tssr105376	transcription start site region 105376	563 bp downstream