rs31532074 SNP Detail

Summary

• ID
  rs31532074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116205956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTAAAG TGATCTTTAC
  TCTTTATCCC CATCTTGGAT ATACTTAGCA CAGGAGTCTT CTGTTTGGAG AAGGTTCATT
  CATATGGTTA GCGTCTTTTG ATTTATTTGA ACTGCTGTTG CAGAGTGCCA GGGCTGTGGA
  TCTGGGGAGA GCAGCTCTGT GGCAGAGCAC TTGACTGCAT GTCGCCCTCT CTGGTCAGCC
  Y
  CGAGAACTGC AGGGAAGCAG CAGGGAAAGG AAGCAGCCGA ACTAAAGGCA GAGCAGGGCT
  CCACTCACTT TGTATTTCTC TGTAAATGAG CAAAAAATAA GACACCTTCC ATATTTATCT
  GTGGAAGAGA AGAAGTGTGT GTCTGTGTGT CTGTGTGTCT GTGTGTGTGT GTGTGTGTGT
  GTATTTTGAC CTTAGTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061764	NES11712153	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31532074					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061764	NES11712153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116205956 () rs orientation: forward

Symbol	Name	Function Class
Rr132422	regulatory region 132422	within coordinates
Rr147131	regulatory region 147131	within coordinates
Washc2	WASH complex subunit 2	within coordinates