rs31532106 SNP Detail

Summary

• ID
  rs31532106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171575080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC CAAATGCTGC AACTTTTCTG
  Y
  ATTTGCAACT CCTCAGAAAT ACCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45175843	mCV24403639	ABI	CRAMUS_MOUSE	f	SNP		T	T							T
ss49748749	NES13032956	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		T	T	T	T		C		T	T	T		T
ss120002626	PARCsnp_1.15390	PARC_SEQ	INBRED	f	SNP								C		T
ss120004996	PARCsnp_1.04766	PARC_SEQ	INBRED	f	SNP								C		T
ss146173578	ENSMUSSNP1137323	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T					C
ss320120634	CHEV_1_173677643	CHEVERUD	SCREENING_POP	f	SNP													T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31532106					SNP	T	T	T	T	T	C	T	C	T	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748749	NES13032956	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171575080 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	784 bp proximal