rs31532109 SNP Detail

Summary

• ID
  rs31532109
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171574207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG AAGCCGTGCT AGGCCAATCA
  K
  CATGCACCAG GATATTTTAT TGAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45166078	mCV24403650	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss49748752	NES13032981	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T		T	T	T	T		G	T	T	T		T
ss120002618	PARCsnp_1.15386	PARC_SEQ	INBRED	f	SNP							G		T
ss120004987	PARCsnp_1.04762	PARC_SEQ	INBRED	f	SNP							G		T
ss146173562	ENSMUSSNP2321715	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320120631	CHEV_1_173676770	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31532109					SNP	T	T	T	T	G	T	G	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748752	NES13032981	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171574207 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	1657 bp proximal