rs31532146 SNP Detail

Summary

• ID
  rs31532146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127201836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGGCAT TCCATCTCTG
  TTCTTGTGCT CCAAAAAGGC CACACCTAAG ATGCTGGAGA GCTGAGGCTC ATGCCTGAGG
  CACGAGTGCA GCTCTGCACT CCTGTCATCC ATAAAACAGG AAACAAAACA ACAGTGCTTA
  GAAATCTTCA CTTCTCCCTC TGCTGCACCT TAGTTGGGCT TTGGAAGCAG AAAAGAGAAT
  Y
  CGTTTGCTGG GAAACAGAGT GAGAACTCCA TCATTTTTCC TCTGCTGTCT GTGTTCTGCC
  AGCTGACGGT ACCTAGTGCA AAATTTAACC ATTAAAGGGG GGCAATCTCC TAGCAACCCC
  ACTGTTGGGC AAAACTAATC AAGTGTCCAC ACTACGGCTT CACCCTGCCT CTCCTCTTAT
  CACCTACTCC CCCAGAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45543562	mCV23997512	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135862626	ENSMUSSNP1699507	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320953852	CHEV_3_127111105	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31532146					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127201836 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	500 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	889 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	770 bp proximal
Tssr35571	transcription start site region 35571	693 bp downstream
Tssr35572	transcription start site region 35572	750 bp downstream
Tssr35573	transcription start site region 35573	799 bp downstream
Tssr35574	transcription start site region 35574	827 bp downstream
Tssr35575	transcription start site region 35575	857 bp downstream