rs3153219 SNP Detail

Summary

• ID
  rs3153219
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104222120 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGTTC CTCCTCCCCC TCCCCCACAA
  A
  GCAAGCAATC TCAAATGGGA TACAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss132753699	ENSMUSSNP1218081	ENSEMBL	ENSEMBL_Sanger	r	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs3153219					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104222120 () rs orientation: reverse

Symbol	Name	Function Class
Kansl1	KAT8 regulatory NSL complex subunit 1	1935 bp downstream
Mapt	microtubule-associated protein tau	within coordinates
Tssr3697	transcription start site region 3697	1366 bp downstream
Tssr105390	transcription start site region 105390	1510 bp downstream
Tssr105391	transcription start site region 105391	1325 bp downstream