rs3153222 SNP Detail

Summary

• ID
  rs3153222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104220510 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCAA CACAAGGAGT CAGGCCTAGG
  R
  GGCATCCACT TAGATAAAAG AAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38691954	mCV24645866	ABI	CRAMUS_MOUSE	r	SNP	C	C	T	C
ss132753675	ENSMUSSNP5079196	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs3153222					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104220510 () rs orientation: reverse

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Tssr3697	transcription start site region 3697	233 bp upstream
Tssr105389	transcription start site region 105389	1086 bp downstream
Tssr105390	transcription start site region 105390	83 bp upstream
Tssr105391	transcription start site region 105391	273 bp upstream
Tssr111229	transcription start site region 111229	1442 bp upstream