rs3153235 SNP Detail

Summary

• ID
  rs3153235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104196983 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTCT CTCCACAGCC CCTGGGGACT
  Y
  GGCCATGAAC AATGGCTGAA AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38729836	mCV24643392	ABI	CRAMUS_MOUSE	r	SNP	A	A	A	G	A
ss132753567	ENSMUSSNP4401393	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3153235					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104196983 () rs orientation: reverse

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Rr386615	regulatory region 386615	within coordinates
Tssr3696	transcription start site region 3696	560 bp upstream
Tssr105381	transcription start site region 105381	483 bp upstream
Tssr105382	transcription start site region 105382	530 bp upstream