rs31532958 SNP Detail

Summary

• ID
  rs31532958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164268819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCATTTCT GAAATATCCT TGCTGCTCCT TTAAGGACCC
  AAGCCAAAAG CAGCACACAA CCAGGAAACC CTCACGTGGG CAAAGAACTC TCTTATCTGG
  R
  CACGAAGCAG TGAGCACACC ACAGTCACAT CACTGGGGAG ACGGGGTCAG GAGGATGGGG
  AGCATAATAA GGCTAGCCTT GGCTCAAAGT GTCTGAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45043658	mCV24721483	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss145978693	ENSMUSSNP5802507	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31532958					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164268819 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr20253	regulatory region 20253	1419 bp distal
Rr25448	regulatory region 25448	1859 bp distal
Rr31656	regulatory region 31656	within coordinates
Tssr9785	transcription start site region 9785	1976 bp upstream
Tssr14743	transcription start site region 14743	308 bp downstream
Tssr14744	transcription start site region 14744	357 bp downstream