rs3153357 SNP Detail

Summary

• ID
  rs3153357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54045496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTCCCAGA GTAAAATCAA AAGTCCTCAT GGTAGCCTAC TGTAGTCCCT GCAGTGGACA
  AAGCCATGTC CTATATATTT AAAAGGCTCC TTAAAAAGTG TCAGTCCTGA CTTCTGAAGA
  CAAATGGAAA TATTCTACTG ACACTGTCTT AAGATAGGAA CATCTTGAAA GAAAAACAAA
  CAGTGAGAAT TCATTCTCTG ACTTCTAAAA AAAAAAAGGC ATTTCTGTGT CACAATGTGT
  CACAAACACT ATACTGTCTT TTCCTTCCTC CCTCCTCCCT GTGGTTTCTT CCTCCCCTGA
  Y
  GTGGTCTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCACA CACACACACA
  CACACACACA CACAAACACA CATACACATT CATAAGCATA CACACCTATT CTACATATGA
  GAAAAACAGA GTGTTTATCT TCCTGAATTT GGGTTATTAG TATAATGATT TTCAGGGGTG
  AGGAAGAGGG CCAGCAAGAG GAGGCAGGGA CATGGGAGTT GGCAATGGAG GAAGAGTGAG
  GATAAGGACA AAATGATATG ATATGATGTG TGTATTTGAA GATGCATAGT ATACATAGTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39153057	mCV23063461	ABI	CRAMUS_MOUSE	f	SNP		T					C	T
ss62397022	NES17240612	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	T		C	T	T	T		T
ss139548922	ENSMUSSNP410582	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss324632415	CHEV_14_54427714	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153357					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62397022	NES17240612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54045496 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492110	regulatory region 492110	1359 bp distal
Rr492111	regulatory region 492111	1620 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	924 bp downstream
Tssr125501	transcription start site region 125501	1567 bp downstream
Tssr125502	transcription start site region 125502	1519 bp downstream