rs31533683 SNP Detail

Summary

• ID
  rs31533683
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78231151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGGAGGA GTCTCACAAA TTGGCCTGCG TTCTGTCTGG
  AGCCACAGAC AGAACTCAGA GCCTTCTAGT GCACAAAATG GCTCAGAAGA GTCGGCTCCT
  K
  GAGGTAGAGA CAGGGCTGAG TGTCTCCAGG ACAGGACTTG AGCACTGCAC AGCAAGATGC
  CTTAGAGCTG GTGGGAGAGC TGATTGCAAC CAGGGTGTCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061903	NES12082981	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31533683					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061903	NES12082981	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78231151 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	1648 bp upstream
Rr505249	regulatory region 505249	1437 bp proximal
Tssr131931	transcription start site region 131931	1456 bp downstream
Tssr131932	transcription start site region 131932	1116 bp upstream
Tssr131933	transcription start site region 131933	1200 bp upstream
Tssr131934	transcription start site region 131934	1264 bp upstream
Tssr131935	transcription start site region 131935	1329 bp upstream
Tssr131936	transcription start site region 131936	1995 bp upstream