rs31534490 SNP Detail

Summary

• ID
  rs31534490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78291995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATACTGT CACAGTGTGT
  TGCAAAAATT CACTGTCTAG CATTTTCCCA GCATACTCTG CACCTGGAGC TTGACAGTAG
  GGAAGAGAAG GTACCAGGAG GGTCTAGTTA GGGAGATGCT CTTCAGTGCC CGAACCCCCA
  CCCCCCATGG GTGGGATATA TAGGCTCACA CTAACTTAGG ATGGCCTGGG CCTGTCCTAT
  R
  TGTCCTGATG GACTTCCAGA GAGCTACTCT CCCCTGGGAT CCTGGCCCTT CAAGCACAAA
  GAAACCTAGT CTCTTTCTGG TCTCTTCCCC TCATGAGCAC TCATAGCCTA GCCTCTCTGA
  CTCTCTTTCT GCTGCCTGGG GTCTTTTGTC ATAACTGTCA ATCAAGCAGG GAGGGTAGTG
  ACCTCAGACC TTTGAAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48062261	NES12080470	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31534490					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062261	NES12080470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78291995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	850 bp distal
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505259	regulatory region 505259	984 bp distal
Rr505260	regulatory region 505260	449 bp distal
Rr505261	regulatory region 505261	1697 bp proximal
Tssr131943	transcription start site region 131943	1608 bp downstream
Tssr131944	transcription start site region 131944	1063 bp downstream
Tssr131945	transcription start site region 131945	999 bp downstream
Tssr131946	transcription start site region 131946	1918 bp upstream
Tssr131947	transcription start site region 131947	1944 bp upstream
Tssr131948	transcription start site region 131948	1965 bp upstream
Tssr135215	transcription start site region 135215	1878 bp upstream
Tssr135216	transcription start site region 135216	1802 bp upstream
Tssr135217	transcription start site region 135217	1379 bp upstream
Tst	thiosulfate sulfurtransferase, mitochondrial	1930 bp upstream