rs31534565 SNP Detail

Summary

• ID
  rs31534565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78231271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC TCCAGGGGGT CAGCTCCTGA
  R
  ACAGGAATGG GAATGACAGA AGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39409841	mCV27573764	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss48061905	NES12082983	PERLEGEN	MM_PANEL2	f	SNP	A			G		G	A	G		G
ss148183095	ENSMUSSNP4930076	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss325024507	CHEV_15_78177501	CHEVERUD	SCREENING_POP	f	SNP					A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31534565					SNP	A	A	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061905	NES12082983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78231271 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	1528 bp upstream
Rr505249	regulatory region 505249	1317 bp proximal
Tssr131931	transcription start site region 131931	1576 bp downstream
Tssr131932	transcription start site region 131932	996 bp upstream
Tssr131933	transcription start site region 131933	1080 bp upstream
Tssr131934	transcription start site region 131934	1144 bp upstream
Tssr131935	transcription start site region 131935	1209 bp upstream
Tssr131936	transcription start site region 131936	1875 bp upstream
Tssr131937	transcription start site region 131937	1902 bp upstream
Tssr131938	transcription start site region 131938	1956 bp upstream