rs31534567 SNP Detail

Summary

• ID
  rs31534567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78231433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCAACC AGGGTGTCTC
  CAGGGGGTCA GCTCCTGAGA CAGGAATGGG AATGACAGAA GGACACGGCT GTCCATGTCT
  CACAGAACAA TGGTCATGGG GAGACACCAG TGCCATGAGA GAAGAGGCTA TAGGGAACAG
  CATGGCTGCT TACCTCAGGA GCTTTAGGGC TAAGGGAACA CAACCCCTAG GATGCCTCTT
  S
  TTTCTTGGAG TCAGAGGCCT GAGCTGGGCC CTACCAGGGG GACATTCTTC CCATGTCCAG
  AGCTTATGGA AGACACCATA TGCACATGTG TCCTTCCTGA GGTGCCACAT TCACAGACAC
  AAATGCCCTT TCCTTTGTAG GATGGAGGTA AAGGTCTCTG GCCTCCTGGC AGCATGGCAG
  CCTTCGCCAC TAAGAACCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39343223	mCV27573766	ABI	CRAMUS_MOUSE	f	SNP	G	G					C
ss48061907	NES12082985	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31534567					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061907	NES12082985	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78231433 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	1366 bp upstream
Rr505249	regulatory region 505249	1155 bp proximal
Tssr131931	transcription start site region 131931	1738 bp downstream
Tssr131932	transcription start site region 131932	834 bp upstream
Tssr131933	transcription start site region 131933	918 bp upstream
Tssr131934	transcription start site region 131934	982 bp upstream
Tssr131935	transcription start site region 131935	1047 bp upstream
Tssr131936	transcription start site region 131936	1713 bp upstream
Tssr131937	transcription start site region 131937	1740 bp upstream
Tssr131938	transcription start site region 131938	1794 bp upstream
Tssr131939	transcription start site region 131939	1862 bp upstream
Tssr131940	transcription start site region 131940	1935 bp upstream