rs31534568 SNP Detail

Summary

• ID
  rs31534568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78231719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC CTTGGGGAGC CTGTGGGAGG
  R
  AACCTGTCCA TGGTGCACAT CATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39300949	mCV27573774	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		A
ss48061909	NES12082987	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	G	G	G	G	A
ss148183105	ENSMUSSNP6900721	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31534568					SNP	G	G	G	G	G	G	G	A	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061909	NES12082987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78231719 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	1080 bp upstream
Rr505249	regulatory region 505249	869 bp proximal
Tssr131932	transcription start site region 131932	548 bp upstream
Tssr131933	transcription start site region 131933	632 bp upstream
Tssr131934	transcription start site region 131934	696 bp upstream
Tssr131935	transcription start site region 131935	761 bp upstream
Tssr131936	transcription start site region 131936	1427 bp upstream
Tssr131937	transcription start site region 131937	1454 bp upstream
Tssr131938	transcription start site region 131938	1508 bp upstream
Tssr131939	transcription start site region 131939	1576 bp upstream
Tssr131940	transcription start site region 131940	1649 bp upstream
Tssr131941	transcription start site region 131941	1743 bp upstream
Tssr131942	transcription start site region 131942	1781 bp upstream