rs31534570 SNP Detail

Summary

• ID
  rs31534570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78231878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCACTG TAGTAAACAG CACTCCAGGT AGACATGAGG
  AAGACTTTTT CTGACTCCCC GGTTGGCGTG AAACAGACAA GGGACCAGAG GCAGCATCCC
  R
  GAGCAGGAAG CCTCTCCTTG CCAAGTGACC TATGTAAGCC CTGCACTGCA ATGGCCTCAT
  GGGTGACTGA GAGTGCACAC TGTGGGACTT CAGCCTGCTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061911	NES12082989	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31534570					SNP	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061911	NES12082989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78231878 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	921 bp upstream
Rr505249	regulatory region 505249	710 bp proximal
Tssr131932	transcription start site region 131932	389 bp upstream
Tssr131933	transcription start site region 131933	473 bp upstream
Tssr131934	transcription start site region 131934	537 bp upstream
Tssr131935	transcription start site region 131935	602 bp upstream
Tssr131936	transcription start site region 131936	1268 bp upstream
Tssr131937	transcription start site region 131937	1295 bp upstream
Tssr131938	transcription start site region 131938	1349 bp upstream
Tssr131939	transcription start site region 131939	1417 bp upstream
Tssr131940	transcription start site region 131940	1490 bp upstream
Tssr131941	transcription start site region 131941	1584 bp upstream
Tssr131942	transcription start site region 131942	1622 bp upstream