rs31534571 SNP Detail

Summary

• ID
  rs31534571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78232611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCCCAGA CCAGCTGGGT TCCCCCCAGG TGGGTGGGAG
  CCTGAAGCCA GCACTGCCAG GCTCCTTGGA GTACATGTGT CTGCCCCCTG GAGGTCAAGC
  R
  CAACTGGTTC CATTGTCCCA GGTGATGGGG CAGGGCCAGG CTATGGATGT GCAGTGTGGG
  TCCAGCCTGG AGACCTCAGG GAGCCCTTCT GTGGAGCCAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061913	NES12082991	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31534571					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061913	NES12082991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78232611 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	188 bp upstream
Rr505249	regulatory region 505249	2 bp distal
Tssr131932	transcription start site region 131932	332 bp downstream
Tssr131933	transcription start site region 131933	248 bp downstream
Tssr131934	transcription start site region 131934	182 bp downstream
Tssr131935	transcription start site region 131935	120 bp downstream
Tssr131936	transcription start site region 131936	535 bp upstream
Tssr131937	transcription start site region 131937	562 bp upstream
Tssr131938	transcription start site region 131938	616 bp upstream
Tssr131939	transcription start site region 131939	684 bp upstream
Tssr131940	transcription start site region 131940	757 bp upstream
Tssr131941	transcription start site region 131941	851 bp upstream
Tssr131942	transcription start site region 131942	889 bp upstream