rs31534572 SNP Detail

Summary

• ID
  rs31534572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78233013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCAGTCT CTGTCTTAAG CTGCCCAGGG TCCCCTCTGG
  AAGCCCAGCT CTAGGGCCAC CAGGGTTTGA GGACTATGTG GAGCTGCCTC CAAGTGTGAG
  Y
  CAGGCTGCCA AGTCCCCTCC AGGCCATCCT GCTCCTCCTG TGGCAAGCAG CCCCACAGTG
  ATCCCAGGAG AGCCCAGGGA GGAAGTGGGC CCAGCATCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48061915	NES12082993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31534572					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061915	NES12082993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78233013 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	153 bp downstream
Rr505249	regulatory region 505249	404 bp distal
Tssr131932	transcription start site region 131932	734 bp downstream
Tssr131933	transcription start site region 131933	650 bp downstream
Tssr131934	transcription start site region 131934	584 bp downstream
Tssr131935	transcription start site region 131935	522 bp downstream
Tssr131936	transcription start site region 131936	133 bp upstream
Tssr131937	transcription start site region 131937	160 bp upstream
Tssr131938	transcription start site region 131938	214 bp upstream
Tssr131939	transcription start site region 131939	282 bp upstream
Tssr131940	transcription start site region 131940	355 bp upstream
Tssr131941	transcription start site region 131941	449 bp upstream
Tssr131942	transcription start site region 131942	487 bp upstream