rs31535244 SNP Detail

Summary

• ID
  rs31535244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAGTTAG GGAGATGCTC
  TTCAGTGCCC GAACCCCCAC CCCCCATGGG TGGGATATAT AGGCTCACAC TAACTTAGGA
  TGGCCTGGGC CTGTCCTATA TGTCCTGATG GACTTCCAGA GAGCTACTCT CCCCTGGGAT
  CCTGGCCCTT CAAGCACAAA GAAACCTAGT CTCTTTCTGG TCTCTTCCCC TCATGAGCAC
  Y
  CATAGCCTAG CCTCTCTGAC TCTCTTTCTG CTGCCTGGGG TCTTTTGTCA TAACTGTCAA
  TCAAGCAGGG AGGGTAGTGA CCTCAGACCT TTGAAGTCCC ACCCCCTGGA AGTCTAAGGC
  CAGCTGTAGA CTCAAGGGCC ATTAGGAGAG TAAAGGAAGG AATAGCAGGT TTGCATTCAA
  CTTCCCTAAA TGATCATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062265	NES12080472	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31535244					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062265	NES12080472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	951 bp distal
Cpgi7287	CpG island 7287	1976 bp proximal
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505259	regulatory region 505259	1085 bp distal
Rr505260	regulatory region 505260	550 bp distal
Rr505261	regulatory region 505261	1596 bp proximal
Tssr131943	transcription start site region 131943	1709 bp downstream
Tssr131944	transcription start site region 131944	1164 bp downstream
Tssr131945	transcription start site region 131945	1100 bp downstream
Tssr131946	transcription start site region 131946	1817 bp upstream
Tssr131947	transcription start site region 131947	1843 bp upstream
Tssr131948	transcription start site region 131948	1864 bp upstream
Tssr135215	transcription start site region 135215	1979 bp upstream
Tssr135216	transcription start site region 135216	1903 bp upstream
Tssr135217	transcription start site region 135217	1480 bp upstream