rs31535246 SNP Detail

Summary

• ID
  rs31535246
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTGCC TGGGGTCTTT
  TGTCATAACT GTCAATCAAG CAGGGAGGGT AGTGACCTCA GACCTTTGAA GTCCCACCCC
  CTGGAAGTCT AAGGCCAGCT GTAGACTCAA GGGCCATTAG GAGAGTAAAG GAAGGAATAG
  CAGGTTTGCA TTCAACTTCC CTAAATGATC ATTCAAAGAA GCTGTTTATA GGGTCAGTGG
  W
  GGCCCTTCTA TAGTCACGTT TTTATTCTCA CTAAGAGGTG GGTTTTGGAG TCTGGCATGG
  TGGTATATGC TTGTAATCCA CCCACCCCCA CTCCCCCACT CCCCCACTCT GGACTCTGAG
  TAGGAAGAGG AGAATTTCAA GTTCCAGGAT AGAGAGTGAG GGAAAGTGCT GGGATGATAG
  CTCACGTGAT TAAGCGCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062267	NES12080473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31535246					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062267	NES12080473	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	1177 bp distal
Cpgi7287	CpG island 7287	1750 bp proximal
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Tssr131943	transcription start site region 131943	1935 bp downstream
Tssr131944	transcription start site region 131944	1390 bp downstream
Tssr131945	transcription start site region 131945	1326 bp downstream
Tssr131946	transcription start site region 131946	1591 bp upstream
Tssr131947	transcription start site region 131947	1617 bp upstream
Tssr131948	transcription start site region 131948	1638 bp upstream
Tssr131949	transcription start site region 131949	1788 bp upstream
Tssr131950	transcription start site region 131950	1832 bp upstream
Tssr135217	transcription start site region 135217	1706 bp upstream