rs31535248 SNP Detail

Summary

• ID
  rs31535248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGAGTCC TAGGCCATGG
  GAAGTCCCCC ATCCCAAAAA TGATATAAAG TTAATAAAAT GGCTGGTGCC TGGGGCCCCA
  TCTGAGATCT GAGATTGTTC TCTGCCCCAC CCCACCACCT TCACACAAGC GCGCGTGCGC
  ACGCACACAC ACGCACACAC ACACACACAC ACACACACAC AGGTTGGAAG TTCCAATATA
  Y
  GACACGTGAC TCAGGAACCC TCACATACCA ACATGAATCG CCCATACCAT GTCATCTCTG
  CTCTCTGACT CCCAAACCAG AGCTGAGGAG GCAAAATTCC CAAGAATGAT GTCAGTAAAG
  GGGCTACTGC TTCCTGAAAG GATTGTCCCA CCTCAGTCTC CTTGCTCTCT GTGCACACAC
  CCGCCCTCCT GTGTCCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062269	NES12080351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31535248					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062269	NES12080351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	1710 bp distal
Cpgi7287	CpG island 7287	1217 bp proximal
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505259	regulatory region 505259	1844 bp distal
Rr505260	regulatory region 505260	1309 bp distal
Rr505261	regulatory region 505261	837 bp proximal
Tssr131944	transcription start site region 131944	1923 bp downstream
Tssr131945	transcription start site region 131945	1859 bp downstream
Tssr131946	transcription start site region 131946	1058 bp upstream
Tssr131947	transcription start site region 131947	1084 bp upstream
Tssr131948	transcription start site region 131948	1105 bp upstream
Tssr131949	transcription start site region 131949	1255 bp upstream
Tssr131950	transcription start site region 131950	1299 bp upstream
Tssr131951	transcription start site region 131951	1624 bp upstream