rs3153526 SNP Detail

Summary

• ID
  rs3153526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54349033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT GAGAAAGTTA CTGGAAAGTC
  R
  GTATGATACT TTTACTTGAA CTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39182083	mCV23058719	ABI	CRAMUS_MOUSE	f	SNP		A			G		A
ss62394433	NES17237666	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A		G	A	A	A		G	A	A	A
ss139556176	ENSMUSSNP477246	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss324634901	CHEV_14_54731251	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs3153526					SNP	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394433	NES17237666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54349033 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
D14Mit259	DNA Segment, Chr 14 Massachusetts Institute of Technology 259	1627 bp distal
Gm30275	predicted gene, 30275	within coordinates
Rr299389	regulatory region 299389	1634 bp distal
Rr299390	regulatory region 299390	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd1	T cell receptor delta diversity 1	1892 bp upstream
Tssr125526	transcription start site region 125526	1751 bp upstream
Tssr125527	transcription start site region 125527	1859 bp upstream