rs31535287 SNP Detail

Summary

• ID
  rs31535287
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78378788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC ATACACGCCA TGCCACCTCC
  S
  AATACTGACG AGCTACAAAT CTTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063027	NES12076816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31535287					SNP	C	C	C	C	G	C	C	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063027	NES12076816	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78378788 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	843 bp distal
Rr505293	regulatory region 505293	596 bp distal
Rr505294	regulatory region 505294	198 bp proximal
Rr505295	regulatory region 505295	267 bp proximal
Rr505296	regulatory region 505296	673 bp proximal
Tssr131958	transcription start site region 131958	728 bp downstream
Tssr131959	transcription start site region 131959	706 bp downstream
Tssr135223	transcription start site region 135223	971 bp upstream
Tssr135224	transcription start site region 135224	841 bp upstream
Tssr135225	transcription start site region 135225	219 bp upstream
Tssr135226	transcription start site region 135226	207 bp upstream
Tssr135227	transcription start site region 135227	449 bp downstream
Tssr135228	transcription start site region 135228	471 bp downstream
Tssr135229	transcription start site region 135229	624 bp downstream
Tssr135230	transcription start site region 135230	653 bp downstream