rs31535289 SNP Detail

Summary

• ID
  rs31535289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78379025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTAAG ACATCCCCAC
  ACAGGATCCA GGGAAGTCCC TCCTAGCGAA AATGGCACAC AGCTTCCCAC AGAGTAGACT
  GGGAAGAAGC CACTGTGCCC TGACATTGGA AGGGGTTTAT TCTTAAAGGA GAAACCATGA
  CAGCCAGGCT ACCCCCTTCC CCAGGGAATC CTAAGACAAG GTTAATCATC AAAGCCCAGA
  Y
  ACAAACTACA AAGGGAACCA AGTTAGAGAT GAGCGCCCCC TCCCAGCTCC CTGTCCCTTG
  GGAGGACCAG CAAGAGGTAG TGGGGTGCCC AGGGCTCCCA GGGGACCACA CAGGGGCATC
  ACCTGGCTGC AACATGGAGT TGTGTCGAGA TGTTCCCTGC AGTCCTGCTG GAGGTTGGGT
  CCACGGCCAT CTCCTGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48063029	NES12076817	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31535289					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48063029	NES12076817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78379025 () rs orientation: forward

Symbol	Name	Function Class
Il2rb	interleukin 2 receptor, beta chain	within coordinates
Rr505292	regulatory region 505292	1080 bp distal
Rr505293	regulatory region 505293	833 bp distal
Rr505294	regulatory region 505294	within coordinates
Rr505295	regulatory region 505295	30 bp proximal
Rr505296	regulatory region 505296	436 bp proximal
Tssr131958	transcription start site region 131958	965 bp downstream
Tssr131959	transcription start site region 131959	943 bp downstream
Tssr135223	transcription start site region 135223	1208 bp upstream
Tssr135224	transcription start site region 135224	1078 bp upstream
Tssr135225	transcription start site region 135225	456 bp upstream
Tssr135226	transcription start site region 135226	444 bp upstream
Tssr135227	transcription start site region 135227	212 bp downstream
Tssr135228	transcription start site region 135228	234 bp downstream
Tssr135229	transcription start site region 135229	387 bp downstream
Tssr135230	transcription start site region 135230	416 bp downstream