rs3153542 SNP Detail

Summary

• ID
  rs3153542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54357415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATA GGGTGGGGTC CCGGGGTGGC
  R
  TACTGGCTGC CCACCATTCA GCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39212518	mCV23058475	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss139556332	ENSMUSSNP56142	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G		A
ss324634955	CHEV_14_54739633	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3153542					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54357415 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125528	transcription start site region 125528	412 bp upstream
Tssr125529	transcription start site region 125529	1512 bp upstream
Tssr125530	transcription start site region 125530	1917 bp upstream
Tssr125531	transcription start site region 125531	1949 bp upstream
Tssr125532	transcription start site region 125532	1967 bp upstream