rs3153543 SNP Detail

Summary

• ID
  rs3153543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54358325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA AGGGGGAATG AAGAGCTGGG
  R
  GCTATAATAG CCGCATCCTC GTTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39235022	mCV23058455	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss139556338	ENSMUSSNP6364281	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324634957	CHEV_14_54740543	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3153543					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54358325 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1358 bp upstream
Tssr125528	transcription start site region 125528	475 bp downstream
Tssr125529	transcription start site region 125529	602 bp upstream
Tssr125530	transcription start site region 125530	1007 bp upstream
Tssr125531	transcription start site region 125531	1039 bp upstream
Tssr125532	transcription start site region 125532	1057 bp upstream
Tssr125533	transcription start site region 125533	1169 bp upstream
Tssr125534	transcription start site region 125534	1245 bp upstream
Tssr125535	transcription start site region 125535	1274 bp upstream
Tssr125536	transcription start site region 125536	1293 bp upstream
Tssr125537	transcription start site region 125537	1322 bp upstream
Tssr125538	transcription start site region 125538	1362 bp upstream