rs3153546 SNP Detail

Summary

• ID
  rs3153546
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54359865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTC AGGAAGTTGA CTGGACAAGA
  K
  ATGACCTCCA CTTGCTGGCC TCTGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39192461	mCV23058429	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss62394265	NES17237543	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		G	T	T	T		G	T	T	T		T
ss139556356	ENSMUSSNP4071719	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss324634963	CHEV_14_54742083	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153546					SNP	T	T	T	T	T	T	G	G	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394265	NES17237543	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54359865 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	65 bp distal
Rr297183	regulatory region 297183	1735 bp proximal
Rr301183	regulatory region 301183	1808 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	167 bp downstream
Trdj1	T cell receptor delta joining 1	730 bp upstream
Tssr125529	transcription start site region 125529	917 bp downstream
Tssr125530	transcription start site region 125530	504 bp downstream
Tssr125531	transcription start site region 125531	485 bp downstream
Tssr125532	transcription start site region 125532	472 bp downstream
Tssr125533	transcription start site region 125533	368 bp downstream
Tssr125534	transcription start site region 125534	275 bp downstream
Tssr125535	transcription start site region 125535	261 bp downstream
Tssr125536	transcription start site region 125536	224 bp downstream
Tssr125537	transcription start site region 125537	180 bp downstream
Tssr125538	transcription start site region 125538	160 bp downstream
Tssr125539	transcription start site region 125539	715 bp upstream
Tssr128533	transcription start site region 128533	1176 bp downstream