rs3153548 SNP Detail

Summary

• ID
  rs3153548
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54359942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAC TTTGTCATTT ACTTGCTCGC
  W
  AAAACAGTAT CCTTGGCGTG CTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39198123	mCV23058247	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss139556362	ENSMUSSNP6436480	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss324634965	CHEV_14_54742160	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3153548					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54359942 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	142 bp distal
Rr297183	regulatory region 297183	1658 bp proximal
Rr301183	regulatory region 301183	1885 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	244 bp downstream
Trdj1	T cell receptor delta joining 1	653 bp upstream
Tssr125529	transcription start site region 125529	994 bp downstream
Tssr125530	transcription start site region 125530	581 bp downstream
Tssr125531	transcription start site region 125531	562 bp downstream
Tssr125532	transcription start site region 125532	549 bp downstream
Tssr125533	transcription start site region 125533	445 bp downstream
Tssr125534	transcription start site region 125534	352 bp downstream
Tssr125535	transcription start site region 125535	338 bp downstream
Tssr125536	transcription start site region 125536	301 bp downstream
Tssr125537	transcription start site region 125537	257 bp downstream
Tssr125538	transcription start site region 125538	237 bp downstream
Tssr125539	transcription start site region 125539	638 bp upstream
Tssr128533	transcription start site region 128533	1099 bp downstream