CTGTA AGCTAACCCA TCCTTGTACA Y GATGTTAAGT CATGATGAGC CAGCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39238205 | mCV23058237 | ABI | CRAMUS_MOUSE | f | SNP | T | T | C | T | |||||||||||||||
ss62394250 | NES17237548 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | T | T | ||||
ss139556374 | ENSMUSSNP4175584 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | T | T | ||||||||||||||||
ss324634969 | CHEV_14_54742665 | CHEVERUD | SCREENING_POP | f | SNP | T | T | |||||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs3153550 | SNP | T | T | T | T | T | T | T | C | C | T | T | T | T | C | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss62394250 | NES17237548 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr14:54360447 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
A430107P09Rik | RIKEN cDNA A430107P09 gene | within coordinates | ||||||
A630038E17Rik | RIKEN cDNA A630038E17 gene | within coordinates | ||||||
Gm30275 | predicted gene, 30275 | within coordinates | ||||||
Rr292699 | regulatory region 292699 | 647 bp distal | ||||||
Rr297183 | regulatory region 297183 | 1153 bp proximal | ||||||
Tcra | T cell receptor alpha chain | within coordinates | ||||||
Tcrd | T cell receptor delta chain | within coordinates | ||||||
Trdd2 | T cell receptor delta diversity 2 | 749 bp downstream | ||||||
Trdj1 | T cell receptor delta joining 1 | 148 bp upstream | ||||||
Tssr125529 | transcription start site region 125529 | 1499 bp downstream | ||||||
Tssr125530 | transcription start site region 125530 | 1086 bp downstream | ||||||
Tssr125531 | transcription start site region 125531 | 1067 bp downstream | ||||||
Tssr125532 | transcription start site region 125532 | 1054 bp downstream | ||||||
Tssr125533 | transcription start site region 125533 | 950 bp downstream | ||||||
Tssr125534 | transcription start site region 125534 | 857 bp downstream | ||||||
Tssr125535 | transcription start site region 125535 | 843 bp downstream | ||||||
Tssr125536 | transcription start site region 125536 | 806 bp downstream | ||||||
Tssr125537 | transcription start site region 125537 | 762 bp downstream | ||||||
Tssr125538 | transcription start site region 125538 | 742 bp downstream | ||||||
Tssr125539 | transcription start site region 125539 | 133 bp upstream | ||||||
Tssr128533 | transcription start site region 128533 | 594 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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