rs3153552 SNP Detail

Summary

• ID
  rs3153552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54361366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA AGAAGAATTA ACGAGAATGT
  R
  GGACTTCCAA CCTAGAGACA CTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62394214	NES17237461	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	G		G
ss139556383	ENSMUSSNP16508	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss324634980	CHEV_14_54743584	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153552					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394214	NES17237461	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54361366 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	1566 bp distal
Rr297183	regulatory region 297183	234 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1668 bp downstream
Trdj1	T cell receptor delta joining 1	721 bp downstream
Tssr125531	transcription start site region 125531	1986 bp downstream
Tssr125532	transcription start site region 125532	1973 bp downstream
Tssr125533	transcription start site region 125533	1869 bp downstream
Tssr125534	transcription start site region 125534	1776 bp downstream
Tssr125535	transcription start site region 125535	1762 bp downstream
Tssr125536	transcription start site region 125536	1725 bp downstream
Tssr125537	transcription start site region 125537	1681 bp downstream
Tssr125538	transcription start site region 125538	1661 bp downstream
Tssr125539	transcription start site region 125539	750 bp downstream
Tssr128533	transcription start site region 128533	279 bp upstream
Tssr128534	transcription start site region 128534	1504 bp downstream