rs31535599 SNP Detail

Summary

• ID
  rs31535599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171287696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAGTTG CCTGTTCTAT
  CCTCATCCTA CCTCCACCCC ACCCCCACTT GCCTCCAGCT TGCTGGATCC CTTCCAAGAT
  TGTTTTGACA AGTGGCTGCA CTCTTTTGTG GAGCTTTCTC TGAACCATGA AATGTCATTC
  TGGAAGCTCC CTTTGGACAA GTAGGGATTT AATTAGAGTA TTGAGAGCCA TAGAGGAAGC
  Y
  GTTAAAAATA GGAGAAGTTG TATTTGAAAT GCAGCATGTA TTTCCACCCA CAGGAATGGT
  ACCGGTAGAA AAAGAACACA TCGAAAATGC TTAGGGTACC AACCAGCTTG ACTCTCCCTC
  CCTCCACCTT AAACCTTCAG CCTCCTCATC CCCTAGATCT GTGATCGTCC TACTCCGTGG
  CAGCTCTTGT CTCCTGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49749715	NES13038936	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T	C	C	C	T		C	T	T	C		T
ss320119050	CHEV_1_173390259	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31535599					SNP	T	C	C	T	C	T	C	C	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49749715	NES13038936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171287696 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr31965	regulatory region 31965	within coordinates
Tssr10058	transcription start site region 10058	1769 bp downstream