rs31535601 SNP Detail

Summary

• ID
  rs31535601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171286257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATGCAT ACACACATAC
  ATACATAGAC ACATACATAC ATACACACAC ATACATACAT ACACACATAC ATGCACACAC
  ATACAAACAT ACATACATAC ACACACATGC AAACATACAT ACATACACAC ATACATACAT
  ACAGGCAAAA CACATAGATC TGGGATGTCA TTAATCATAC AAGACCCTCT ATTAGGGAGA
  R
  AGAGCTCCTG GGATGGATCC ACTCTTGTGG GAAGGAGAAA GGCAGAGGGA GAGTTTCTTG
  CTATACAGGG AGATTTGAAA CTGGGGCGAT CCTTCAGAGA TCTCCCAAAT CTGAGTTAGA
  AAGATGGATT ACCTACACAC CAGTAGTGGA AGTGGAAGGC CAAGCTAACC TGGTCTTTCC
  CAACAAAACA AAACAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49749717	NES13039001	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31535601					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49749717	NES13039001	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171286257 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	741 bp distal
Rr31965	regulatory region 31965	945 bp proximal
Tssr10057	transcription start site region 10057	570 bp downstream
Tssr10058	transcription start site region 10058	330 bp downstream