rs31535603 SNP Detail

Summary

• ID
  rs31535603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171285360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG TGCGGAGGTT CCTGGTTATG
  R
  TTGAATCACC AAGTGGGAGG TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49749719	NES13039027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	A	A		G		A	A	A		A
ss119999049	PARCsnp_1.13602	PARC_SEQ	INBRED	f	SNP							G		A
ss120001154	PARCsnp_1.02845	PARC_SEQ	INBRED	f	SNP							G		A
ss146163768	ENSMUSSNP4641403	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A				G
ss320119026	CHEV_1_173387923	CHEVERUD	SCREENING_POP	f	SNP											A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31535603					SNP	A	A	A	A	G	A	G	G	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49749719	NES13039027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171285360 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	within coordinates
Rr31965	regulatory region 31965	1842 bp proximal
Tssr10057	transcription start site region 10057	313 bp upstream
Tssr10058	transcription start site region 10058	541 bp upstream