rs3153597 SNP Detail

Summary

• ID
  rs3153597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54389875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT AAAAACCAGG CCTGACTTTC
  Y
  TTAGCTTTAA ACCACCAATC AAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324635147	CHEV_14_54772093	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs3153597					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54389875 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	735 bp upstream
Rr492143	regulatory region 492143	245 bp proximal
Rr492144	regulatory region 492144	611 bp proximal
Rr492145	regulatory region 492145	746 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	728 bp upstream
Tssr125543	transcription start site region 125543	772 bp upstream
Tssr125544	transcription start site region 125544	788 bp upstream
Tssr125545	transcription start site region 125545	835 bp upstream
Tssr128540	transcription start site region 128540	1008 bp upstream