rs3153598 SNP Detail

Summary

• ID
  rs3153598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54390468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC AGTGTCCTTT GAGCTGGGTG
  R
  CTTTGTTTTT TGACCTCACA GCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5097258	WI_WGS_14_45243562	WI	MOUSE	f	SNP	A						G
ss62393785	NES17237154	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		A	A	A	A		G	A	A	A		A
ss139556940	ENSMUSSNP4457125	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss324635156	CHEV_14_54772686	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3153598					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393785	NES17237154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54390468 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	142 bp upstream
Rr492143	regulatory region 492143	within coordinates
Rr492144	regulatory region 492144	18 bp proximal
Rr492145	regulatory region 492145	153 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Traj61	T cell receptor alpha joining 61	1994 bp upstream
Tssr125542	transcription start site region 125542	135 bp upstream
Tssr125543	transcription start site region 125543	179 bp upstream
Tssr125544	transcription start site region 125544	195 bp upstream
Tssr125545	transcription start site region 125545	242 bp upstream
Tssr128540	transcription start site region 128540	1601 bp upstream