rs31536214 SNP Detail

Summary

• ID
  rs31536214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78293289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTTCAC TCTGTAGCCC
  AAGCCATCCT GGAACTCTCT CTGTAGACCA GGCTAGCCTC ACACTCACAG AATTCGAGTG
  CTGGGACAAA TGGTGTGTAC CACCAGTGCC CGCCCGGCTT AGCCCTTATG CTTATCCCTA
  GGTATAAAGT GTGTCTGCTT CCCACGGAAG GCCTTCTGCC TTCTCTCTCC AATCCAGGCT
  R
  AGGTAGAGGC CTTGCTGTGC ACACTAAACT CCAGAATTCC TCACTTGCAC CATTGCTTGA
  GCTGCTCTGG GGCCTACCAA AGTCAAGAGT TCTCAATGTG TGCCCCCACC GCCACCCCAC
  ACAGGGCCTA GGCCAGTGAT GCAAACCTAT CCCCACTTAG TTTCTGTTGT CTATTTGTGG
  GGTTTTGTTG TTATTGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062275	NES12080328	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31536214					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062275	NES12080328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78293289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7287	CpG island 7287	783 bp proximal
Gm52185	predicted gene, 52185	1575 bp downstream
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Tssr131946	transcription start site region 131946	624 bp upstream
Tssr131947	transcription start site region 131947	650 bp upstream
Tssr131948	transcription start site region 131948	671 bp upstream
Tssr131949	transcription start site region 131949	821 bp upstream
Tssr131950	transcription start site region 131950	865 bp upstream
Tssr131951	transcription start site region 131951	1190 bp upstream