rs31536223 SNP Detail

Summary

• ID
  rs31536223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78293968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGTAAT AAATGAGGAT
  TAAATGTTTC TGGGCAAAGG GTGAATTCTG GTTATGTTCC CATTGGACTC CTAGACCGGC
  TCAATGAATG TGTGGATCTG ATTGGCTGTG AAGCTGGGCT ACATCTTAGA GAAGGGCTGA
  AACTTTGGTC TTATTTGCTT TACCTATGGG CTAATTGAGC CTGGCCCGGG CTCTACCCTA
  Y
  TTTGCTGGGC AAGGAATAGA GTGAGGGACA CGCACCACCC TCTCCTGGCG CCCGCGGTCG
  TAACTGTTCT TTGAAGCCAT GCATTATTCA AAGCCTGGCA GGGGGCTCCC TGGGTGTTAA
  AGGCAGAGCC TGGCTCACCC AAGGCCCTGT CTGAGTTCTT GGACTCTGCT CTGCCGGTAC
  GCAGGCTCCA CCTACACCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062285	NES12080257	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31536223					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062285	NES12080257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78293968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7287	CpG island 7287	104 bp proximal
Gm52185	predicted gene, 52185	896 bp downstream
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505261	regulatory region 505261	within coordinates
Tssr131946	transcription start site region 131946	40 bp downstream
Tssr131947	transcription start site region 131947	20 bp downstream
Tssr131948	transcription start site region 131948	within coordinates
Tssr131949	transcription start site region 131949	142 bp upstream
Tssr131950	transcription start site region 131950	186 bp upstream
Tssr131951	transcription start site region 131951	511 bp upstream