rs31536405 SNP Detail

Summary

• ID
  rs31536405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171284658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG GGAGTGTTGG GAAGTAGAGT
  Y
  CTTGTCAAGT AATGGTTTCT GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49749721	NES13039052	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	T	T		C		T	T	T		T
ss119999039	PARCsnp_1.13597	PARC_SEQ	INBRED	f	SNP								C		T
ss120001146	PARCsnp_1.02841	PARC_SEQ	INBRED	f	SNP								C		T
ss146163752	ENSMUSSNP3013017	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T					C
ss320119024	CHEV_1_173387221	CHEVERUD	SCREENING_POP	f	SNP													T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31536405					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49749721	NES13039052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171284658 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr14113	regulatory region 14113	1858 bp distal
Rr25638	regulatory region 25638	537 bp proximal
Tssr10057	transcription start site region 10057	1015 bp upstream
Tssr10058	transcription start site region 10058	1243 bp upstream