rs31536539 SNP Detail

Summary

• ID
  rs31536539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78332117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCAAG GCAAATTAAG
  AGGTCCTGAA AAGGAATTGT TTTTCAAGCA CCCAGAGTTC CAACAGCCCA GCTGCTCGTC
  AAAGAAAAGA TCGCCACCAG GGGGCGCGCG GGGCAAGCCT GGGTCTTGTC GTCACCCTTT
  CCCCGCCTCC CGCCCTTTTT CAAGCCAAGG AAATGTGGGT TCCTGGTGGA TAAAAAAGAT
  R
  GATTCCTGGA TTGTTATCCT CAGAGGACAG GCCCAGAAAG TGGGCAGGGC ATCTGGAAAA
  TGTGATTTAA AAAAAAAAGA AGAAGTTATT TACTTTAAAG AATGCATTTT AAAGAAATCG
  CAGTACTTTC CCTTTATGCA TGGGAGGCAT TCCTAGACTC CCGTGGACAC CAGAAATCCC
  ACGCAGTGGC GAACACTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062571	NES12078558	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31536539					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062571	NES12078558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78332117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr369958	regulatory region 369958			within coordinates
Rr390961	regulatory region 390961			1107 bp upstream
Rr505277	regulatory region 505277			within coordinates
Rr505278	regulatory region 505278			90 bp distal
Rr505279	regulatory region 505279			489 bp proximal
Rr505280	regulatory region 505280			1183 bp proximal
Tmprss6	transmembrane serine protease 6			Intron
				Noncoding-Transcript-Variant
Tssr131957	transcription start site region 131957			1463 bp upstream