rs31536543 SNP Detail

Summary

• ID
  rs31536543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78332683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCAGATT TAACTCCTGA
  CACAGGCACT TAACCCGCAA GAGCAAGGGT TAGTCTGACA AGGAAAGTTA AAAGCCCGGA
  GACGGGAGGG AGAGCCAGAG CCTAGCCGCC CTTGACAAAT GAGATCACCA CTAGGGGGAG
  CCCTGGAGCA AGCCAGTCCC TTTCAAGCTA AGAGGAACCC GATTGTTCCT TGAGGACGTT
  R
  TTATAAATAT ATAAATTTGT GTTATGGTTA TGATAATCTT ATACCTATCA TGCATTGCTA
  TCCCAGGGAA GGGTCCCAAG AAGCAGGCAG GGAAGCTGGG AGCATCCCAG AACAAATGTA
  AGATTCAGGC ATTCGGAGCC CTGTTCCCAG GTGCGGCCCT CTGAGTTTCT GGCCCCTCTG
  GTCCTCCCGT CCACCTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48062575	NES12078505	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31536543					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48062575	NES12078505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78332683 () rs orientation: forward

Symbol	Name	Function Class
Rr369958	regulatory region 369958	523 bp downstream
Rr390961	regulatory region 390961	541 bp upstream
Rr505277	regulatory region 505277	within coordinates
Rr505278	regulatory region 505278	656 bp distal
Rr505279	regulatory region 505279	56 bp distal
Rr505280	regulatory region 505280	617 bp proximal
Tmprss6	transmembrane serine protease 6	within coordinates
Tssr131957	transcription start site region 131957	897 bp upstream