rs31536772 SNP Detail

Summary

• ID
  rs31536772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51106900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG TAAGGCTCAG TAGTCTATGA
  Y
  TGTAATCCCA ACACTGAAAG GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39300150	mCV25390479	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss324619653	CHEV_14_51489118	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31536772					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51106900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	834 bp proximal
Gm26782	predicted gene, 26782	809 bp upstream
Rr404075	regulatory region 404075	1071 bp upstream
Rr491714	regulatory region 491714	536 bp proximal
Rr491715	regulatory region 491715	931 bp proximal
Rr491716	regulatory region 491716	1107 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	912 bp upstream
Tssr128379	transcription start site region 128379	88 bp upstream
Tssr128380	transcription start site region 128380	1056 bp downstream
Tssr128381	transcription start site region 128381	1114 bp downstream