rs31536838 SNP Detail

Summary

• ID
  rs31536838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72798183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAACCCTT GAGAAAACAT GAAACCATAA TAAAAAAAAG
  ATAATAAGAA TGATAAATGG CAGTTTTTAA ATATACAAAA ATAAAATTTG GTAGTAGTTG
  R
  TAAGAGTTAT TTATCTAAGG CCTAATTTAA GTACGCATGT GCTTCTTATA TAGCAGCTGT
  GCAGACGGAT CTTCATGCAG GTCCCCCAGC AACTGGAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46578941	NES10451860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31536838					SNP	G	G	G	G	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46578941	NES10451860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72798183 () rs orientation: forward

Symbol	Name	Function Class
4933408M05Rik	RIKEN cDNA 4933408M05 gene	1448 bp downstream
Cnga1	cyclic nucleotide gated channel alpha 1	within coordinates
Tssr51320	transcription start site region 51320	1885 bp downstream
Tssr51321	transcription start site region 51321	1918 bp downstream